U.S. Department of Energy Office of Biological and Environmental Research

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Metagenomics of Globally Important Eukaryotic Phytoplankton
Published: August 23, 2010
Posted: August 31, 2010

Global CO2 fixation is divided equally among terrestrial and marine ecosystems, each accounting for ~50 billion tons of carbon per year. Tiny “pico” phytoplankton are responsible for much of the CO2 capture in marine ecosystems; however, the genomes of only six of these organisms have been sequenced. In a new study published this month in the Proceedings of the National Academy of Sciences(USA)), members of the prymnesiophyte phytoplankton lineage sequenced at the DOE Joint Genome Institute. Because most of these tiny organisms cannot be grown in culture, metagenomic approaches (the study of genetic material recovered directly from environmental samples) were used to analyze cells from subtropical North Atlantic waters. The organisms analyzed have composite genomes with strong evolutionary derivations from different sources. This lineage is thought to be responsible for 25% of the global picophytoplankton biomass whose abundance varies in different biogeographical areas. Changes in ocean temperatures associated with global climate processes could lead to changes in the abundance of these important organisms, with as yet poorly characterized consequences. This study shows the value of culture-independent metagenomic analyses for characterizing the marine microbiome with the potential for exploring its impacts on climate change processes. The research was led by Alexandra Worden at the Monterey Bay Aquarium and Research Institute.

Reference: Cuveliera, M.L. et.al., “Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton” (2010) Proc. Nat. Acad. Sci.(USA) 107, 14679–14684.

Contact: Dan Drell, SC-23.2, (301) 903-4742
Topic Areas:

  • Research Area: Genomic Analysis and Systems Biology
  • Research Area: Microbes and Communities
  • Research Area: DOE Joint Genome Institute (JGI)

Division: SC-23.2 Biological Systems Science Division, BER

 

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