U.S. Department of Energy Office of Biological and Environmental Research

BER Research Highlights


Bionformatics Helps Identify Genes Associated with Plant Cell Wall Traits
Published: June 21, 2010
Posted: July 28, 2010

The completion of the whole genome sequence of poplar (Populus) has made possible the use of bioinformatics and evolutionary methods to identify new candidate genes associated with plant cell wall traits. Researchers at DOE's BioEnergy Science Center at the Oak Ridge National Laboratory have used information on the poplar genome structure and its duplication, quantitative trait locus mapping, and analysis of publicly available microarray data to reduce the thousands of poplar genes that could contribute to cell wall traits down to 15-20 candidate genes. These genes are now being tested experimentally to identify their functions. This research highlights how bioinformatics can help focus research in the most promising directions potentially reducing time consuming experimental methods for correlating genes with phenotype. The results will facilitate research to enhance plant biomass properties for more efficient conversion into biofuels.

Reference: P. Ranjan, et al., "Bioinformatics-Based Identification of Candidate Genes from QTLs Associated with Cell Wall Traits in Populus," Bioenergy Research, June 2010, Vol. 3 pg. 172-182.

Contact: Susan Gregurick, SC-23.2, (301) 903-7672
Topic Areas:

  • Research Area: Genomic Analysis and Systems Biology
  • Research Area: Plant Systems and Feedstocks, Plant-Microbe Interactions
  • Research Area: Sustainable Biofuels and Bioproducts
  • Research Area: DOE Bioenergy Research Centers (BRC)
  • Research Area: Computational Biology, Bioinformatics, Modeling

Division: SC-23.2 Biological Systems Science Division, BER

 

BER supports basic research and scientific user facilities to advance DOE missions in energy and environment. More about BER

Recent Highlights

Aug 24, 2019
New Approach for Studying How Microbes Influence Their Environment
A diverse group of scientists suggests a common framework and targeting of known microbial processes [more...]

Aug 08, 2019
Nutrient-Hungry Peatland Microbes Reduce Carbon Loss Under Warmer Conditions
Enzyme production in peatlands reduces carbon lost to respiration under future high temperatures. [more...]

Aug 05, 2019
Amazon Forest Response to CO2 Fertilization Dependent on Plant Phosphorus Acquisition
AmazonFACE Model Intercomparison. The Science Plant growth is dependent on the availabi [more...]

Jul 29, 2019
A Slippery Slope: Soil Carbon Destabilization
Carbon gain or loss depends on the balance between competing biological, chemical, and physical reac [more...]

Jul 15, 2019
Field Evaluation of Gas Analyzers for Measuring Ecosystem Fluxes
How gas analyzer type and correction method impact measured fluxes. The Science A side- [more...]

List all highlights (possible long download time)