BER launches Environmental System Science Program. Visit our new website under construction!

U.S. Department of Energy Office of Biological and Environmental Research

BER Research Highlights

Advances in On-Line Resources for Microbial Research
Published: February 01, 2010
Posted: February 10, 2010

Substantial bioinformatics capabilities are required for systems biology approaches to solve DOE mission-related research problems in bioenergy and the environment. This is particularly true when microbiology is involved, as new technologies are generating vast amounts of data. DOE efforts to meet the scientific need for database systems are highlighted in the latest issue of Nucleic Acids Research. These include:

MicrobesOnLine (A. Arkin, Joint Bioenergy Institute and LBNL), a resource to integrate experimental data with genomic sequence data to understand microbial evolution and compare microbial functions under varied experimental conditions;

MiST2 (I. Zhulin, BioEnergy Science Center), which catalogs signalling proteins;

RegPrecise (D. Rodionov, LBNL), which catalogs transcription factor genes and will assist our understanding of cellular activity; and

IMG (N. Kyrpides, Joint Genome Institute), the Integrated Microbial Genomes resource provides new tools such as phylogenetic tools for comparative genomic analysis.

Taken together, these bioinformatics resources are leading to a more complete systems biological framework for microbial studies.

Reference: Nucleic Acids Research. January 2010, Vol. 38.

Contact: Susan Gregurick, SC-23.2, (301) 903-7672
Topic Areas:

  • Research Area: Genomic Analysis and Systems Biology
  • Research Area: Microbes and Communities
  • Research Area: DOE Joint Genome Institute (JGI)
  • Research Area: Sustainable Biofuels and Bioproducts
  • Research Area: DOE Bioenergy Research Centers (BRC)
  • Research Area: Computational Biology, Bioinformatics, Modeling
  • Research Area: Research Technologies and Methodologies
  • Cross-Cutting: Scientific Computing and SciDAC

Division: SC-33.2 Biological Systems Science Division, BER


BER supports basic research and scientific user facilities to advance DOE missions in energy and environment. More about BER

Recent Highlights

Mar 23, 2021
Molecular Connections from Plants to Fungi to Ants
Lipids transfer energy and serve as an inter-kingdom communication tool in leaf-cutter ants&rsqu [more...]

Mar 19, 2021
Microbes Use Ancient Metabolism to Cycle Phosphorus
Microbial cycling of phosphorus through reduction-oxidation reactions is older and more widespre [more...]

Feb 22, 2021
Warming Soil Means Stronger Microbe Networks
Soil warming leads to more complex, larger, and more connected networks of microbes in those soi [more...]

Jan 27, 2021
Labeling the Thale Cress Metabolites
New data pipeline identifies metabolites following heavy isotope labeling.

Analysis [more...]

Aug 31, 2020
Novel Bacterial Clade Reveals Origin of Form I Rubisco

  • All plant biomass is sourced from the carbon-fixing enzyme Rub [more...]

List all highlights (possible long download time)