BER launches Environmental System Science Program. Visit our new website under construction!

U.S. Department of Energy Office of Biological and Environmental Research

BER Research Highlights


A Genomic-Scale Reconstruction of Mycoplasma genitalium
Published: March 02, 2009
Posted: March 27, 2009

Reconstructing an organism's metabolic pathways is an important step in being able to understand and use those biological capabilities to solve DOE energy and environmental challenges. This rapidly evolving field requires development of sophisticated computational tools to model metabolic networks, tools to bridge gaps in the models, and experiments to resolve inconsistencies. Dr. Costas Maranas of Penn State University describes the systematic reconstruction of pathways involving 40% of the genes in Mycoplasma genitalium, one of the smallest known self-replicating organisms. Their computational model of M. genitalium iPS189 includes 262 biochemical reactions and 274 metabolites and is 87% accurate in capturing genes essential for M. genitalium function. This work provides a roadmap for the automated construction of computer-based metabolic models for other organisms important for DOE mission needs. Details can be found in the journal PLoS Computational Biology, February 2009, Vol. 5 , Issue (2).  This work is jointly sponsored by DOE's Office of Biological and Environmental Science and the Office of Advanced Scientific Computing Research.

Contact: Susan Gregurick, SC-21.1, (301) 903-7672, Christine Chalk, SC-21.1 (301) 903-5152
Topic Areas:

  • Research Area: Microbes and Communities
  • Research Area: Sustainable Biofuels and Bioproducts
  • Research Area: Biosystems Design
  • Research Area: Computational Biology, Bioinformatics, Modeling

Division: SC-33 BER
      (formerly SC-23 OBER)

 

BER supports basic research and scientific user facilities to advance DOE missions in energy and environment. More about BER

Recent Highlights

Jan 11, 2022
No Honor Among Copper Thieves
Findings provide a novel means to manipulate methanotrophs for a variety of environmental and in [more...]

Dec 06, 2021
New Genome Editing Tools Can Edit Within Microbial Communities
Two new technologies allow scientists to edit specific species and genes within complex laborato [more...]

Oct 27, 2021
Fungal Recyclers: Fungi Reuse Fire-Altered Organic Matter
Degrading pyrogenic (fire-affected) organic matter is an important ecosystem function of fungi i [more...]

Oct 19, 2021
Microbes Offer a Glimpse into the Future of Climate Change
Scientists identify key features in microbes that predict how warming affects carbon dioxide emi [more...]

Aug 25, 2021
Assessing the Production Cost and Carbon Footprint of a Promising Aviation Biofuel
Biomass-derived DMCO has the potential to serve as a low-carbon, high-performance jet fuel blend [more...]

List all highlights (possible long download time)