BER launches Environmental System Science Program. Visit our new website under construction!

U.S. Department of Energy Office of Biological and Environmental Research

BER Research Highlights

Nitrogen Uptake Between Fungi and Orchids
Published: November 11, 2016
Posted: March 16, 2017

Researchers investigated Tulasnella calospora as both a free-living mycelium and in symbiosis with Serapias vomeracea (pictured). [Image courtesy Ziegler175 Wikimedia Commons, CC BY-SA 3.0]

Fungal and plant gene expression provides clues to nitrogen pathways.

The Science                       
Orchids are an example of an experimentally tractable plant that is highly dependent on its relationship with its mycorrhizal fungal partners for nutrient supply. In a recent study, researchers, for the first time, identified some genetic determinants potentially involved in nitrogen uptake and transfer in orchid mycorrhizas.

The Impact
This study provides a model system, amenable to experimental manipulation, for plant-fungi nutrient exchanges on a symbiotic level. It also offers insights into how host plants benefit from the mutualistic relationships formed with soil fungi that can expand their habitat range. Understanding these vital relationships may shed light on microbial symbioses applicable to growing bioenergy feedstock plants.

Orchids, like the majority of terrestrial plants, form symbiotic relationships between their plant roots and soil fungi, known as mycorrhizal associations. However, unlike other terrestrial plants, orchids rely on their mycorrhizal fungal partners for nutrient supply during the feed germination and development stages. Following these stages, most orchid species develop leaves and are capable of self-nourishment, whereas some species continue to rely on their fungal partners for an organic carbon supply. In this study, a team led by University of Turin researchers investigated the orchid mycorrhizal fungus Tulasnella calospora as both a free-living mycelium and in symbiosis with the photosynthetic orchid long-lipped serapias, or Serapias vomeracea. For the first time, researchers looked at the fungal genes that may have been involved in both the uptake and transfer of nitrogen to the host plant. RNA sequencing for the project was performed at the U.S. Department of Energy’s (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility.

The team also used JGI’s fungal genome database MycoCosm to identify fungal genes coding for proteins that were involved in nitrogen uptake and transfer. They found that the T. calospora genome has two genes coding for ammonium transporters and several genes coding for amino acid transporters, proteins that play roles in the nitrogen nutrient pathway. Overall, the orchid mycorrhizal fungi’s use of nitrogen may broaden the habitat ranges of orchids, allowing them to grow in a variety of soil types. Of more general interest to the DOE, this study provides important insights for this process and furthers understanding of plant-microbial symbioses that are vital for plant health and may inform understanding of microbial symbioses relevant to bioenergy feedstock plants.

Daniel Drell, Ph.D.
Program Manager
Biological Systems Sciences Division
Office of Biological and Environmental Research
Office of Science
U.S. Department of Energy

Silvia Perotto
University of Turin

U.S. Department of Energy Office of Science
Ministry of Education, Universities, and Research (Italy)
University of Turin
‘Compagnia di San Paolo’ (Torino, Italy)
Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE)

Fochi, V., W. Chitarra, A. Kohler, S. Voyron, V. Singan, E. Lindquist, K. Berry, M. Girlanda, I. V. Grigoriev, F. Martin, R. Balestrini, and S. Perotto. 2017. “Fungal and Plant Gene Expression in the Tulasnella calosporaSerapias vomeracea Symbiosis Provides Clues About Nitrogen Pathways in Orchid Mycorrhizas,” New Phytologist 213(1), 365-79. DOI: 10.1111/nph.14279. (Reference link)

Related Links
JGI MycoCosm Fungal Genomic Resource
JGI MycoCosm Fungal Genomic Resource: Tulasnella calospora
JGI Community Science Plans FY 2013: The Mycorrhizal Genomics Initiative
JGI Community Science Plan FY 2016: Microbial Mutualism with Orchids
JGI MycoCosm Fungal Genomic Resource: Sebacina vermifera
JGI MycoCosm Fungal Genomic Resource: Sebacina vermifera
JGI MycoCosm Fungal Genomic Resource: Ceratobasidium

Topic Areas:

  • Research Area: Genomic Analysis and Systems Biology
  • Research Area: Microbes and Communities
  • Research Area: Plant Systems and Feedstocks, Plant-Microbe Interactions
  • Research Area: Sustainable Biofuels and Bioproducts
  • Research Area: DOE Joint Genome Institute (JGI)

Division: SC-33.2 Biological Systems Science Division, BER


BER supports basic research and scientific user facilities to advance DOE missions in energy and environment. More about BER

Recent Highlights

Mar 23, 2021
Molecular Connections from Plants to Fungi to Ants
Lipids transfer energy and serve as an inter-kingdom communication tool in leaf-cutter ants&rsqu [more...]

Mar 19, 2021
Microbes Use Ancient Metabolism to Cycle Phosphorus
Microbial cycling of phosphorus through reduction-oxidation reactions is older and more widespre [more...]

Feb 22, 2021
Warming Soil Means Stronger Microbe Networks
Soil warming leads to more complex, larger, and more connected networks of microbes in those soi [more...]

Jan 27, 2021
Labeling the Thale Cress Metabolites
New data pipeline identifies metabolites following heavy isotope labeling.

Analysis [more...]

Aug 31, 2020
Novel Bacterial Clade Reveals Origin of Form I Rubisco

  • All plant biomass is sourced from the carbon-fixing enzyme Rub [more...]

List all highlights (possible long download time)